Function reference • mse

All functions
`initialize(<FLiem>)` `iters(<FLiem>)`	S4 class `FLiem`
`FLmse()` `FLmse()` `om()` `om<-`() `tracking()` `tracking<-`() `control()` `control<-`() `oem()` `oem<-`() `args(<FLmse>)` `args<-`(<FLmse>,<list>)	S4 class `FLmse`
`FLoem()` `FLoem()` `observations()` `observations<-`() `deviances()` `deviances<-`() `show(<FLoem>)` `iter(<FLoem>)` `combine(<FLoem>,<FLoem>)`	Specification for the observation error model (OEM).
`FLom()` `FLom()` `stock(<FLom>)` `stock<-`(<FLom>,<FLStock>) `sr(<FLom>)` `sr<-`(<FLom>,<FLSR>) `combine(<FLom>,<FLom>)` `om<-`(<FLmse>,<FLo>) `tracking<-`(<FLmse>,<FLQuants>) `control<-`(<FLmse>,<mpCtrl>) `oem<-`(<FLmse>,<FLoem>)	A class for an operating model (OM)
`bisect()`	Bisection search for a forecast target providing a given performance statistic value.
`catchSSB.hcr()`	A HCR to set total catch based on SSB depletion level
`computeFp05()`	Calculates the Fbar value giving a maximum probability of ssb being below Blim of 5%
`cpue.hcr()`	cpue.hcr
`db()`	Creates a single table of output from an FLmse object
`debug()` `undebug(<mseCtrl>,<missing>)` `undebug(<mpCtrl>,<character>)` `undebug(<mpCtrl>,<missing>)` `undebug(<FLo>,<ANY>)`	Debugging mse modules
`effort.is()`	effort implementation function
`fixedC.hcr()`	A fixed catch HCR
`fixedF.hcr()`	A fixed target f
`fwd.om()`	A method to project the operating model (OM)
`expandGrid()` `gridList()`	Functions to create grids and lists of model and simulation runs
`ices.hcr()`	The typical HCR used by ICES
`index.hat(<FLIndexBiomass>,<FLStock>)`	Predicted index of abundance from abundance estimates
`indicator.hcr()`	An indicator-based HCR
`indicator.is()`	indicator implementation function
`kobestatistics`	Kobe statistics
`mcN()`	Compute number of necessary Monte Carlo runs
`movingF.hcr()`	TODO:description
`mp()`	mp executes a single run of a Management Procedure
`mpCtrl-class` `mpCtrl` `initialize,mpCtrl-method` `mpCtrl-methods` `est` `est-methods` `est,mpCtrl-method` `est` `est` `est` `phcr` `phcr-methods` `phcr,mpCtrl-method` `phcr` `phcr` `phcr` `hcr` `hcr-methods` `hcr,mpCtrl-method` `hcr` `hcr` `hcr` `isys` `isys-methods` `isys,mpCtrl-method` `isys` `isys` `isys` `tm` `tm-methods` `tm,mpCtrl-method` `tm` `tm` `tm` `show,mpCtrl-method` `iters,mpCtrl-method` `method,mpCtrl-method` `method` `method` `args` `args` `debug,mpCtrl,character-method`	S4 class `mpCtrl`
`mseCtrl-class` `mseCtrl` `initialize,mseCtrl-method` `mseCtrl-methods` `method` `method-methods` `method,mseCtrl-method` `method` `method` `method` `args` `args-methods` `args,mseCtrl-method` `args` `args` `args` `show,mseCtrl-method` `exists` `exists,mseCtrl-method` `exists,mpCtrl-method`	S4 class `mseCtrl`
`p4om`	FLom object for North sea plaice
`perfect.oem()`	A perfect observation of catch and abundances-at-age.
`perfect.sa()`	A perfect 'estimate' of abundances, catches and harvest.
`performance(<FLQuants>)` `performance(<FLStock>)` `performance(<FLStocks>)` `performance(<list>)` `performance(<FLom>)`	Compute performance statistics
`sampling.oem()`	Samples from an operating model to obtain catch, biology and abundance data
`statistics`	Example set of performance statistics
`tac.is()`	TAC implementation function
`tune()`	tune

Reference

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