Function reference • mse

All functions
`initialize(<FLiem>)` `iters(<FLiem>)`	S4 class `FLiem`
`FLmse()` `FLmse()` `om()` `om<-`() `tracking()` `tracking<-`() `control()` `control<-`() `oem()` `oem<-`() `args(<FLmse>)` `args<-`(<FLmse>,<list>)	S4 class `FLmse`
`FLoem()` `FLoem()` `observations()` `observations<-`() `deviances()` `deviances<-`() `show(<FLoem>)` `iter(<FLoem>)` `combine(<FLoem>,<FLoem>)`	Specification for the observation error model (OEM).
`FLom()` `FLom()` `stock(<FLom>)` `stock<-`(<FLom>,<FLStock>) `sr(<FLom>)` `sr<-`() `show(<FLom>)` `combine(<FLom>,<FLom>)` `om<-`(<FLmse>,<FLo>) `tracking<-`(<FLmse>,<FLQuants>) `control<-`(<FLmse>,<mpCtrl>) `oem<-`(<FLmse>,<FLoem>)	A class for an operating model (OM)
`bisect()`	Bisection search for a forecast target providing a given performance statistic value.
`catchSSB.hcr()`	A HCR to set total catch based on SSB depletion level
`computeFp05()`	Calculates the Fbar value giving a maximum probability of ssb being Blim of 5%
`cpue.hcr()`	cpue.hcr
`db()`	Creates a single table of output from an FLmse object
`debug()` `undebug(<mseCtrl>,<missing>)` `undebug(<mpCtrl>,<character>)` `undebug(<mpCtrl>,<missing>)` `undebug(<FLo>,<ANY>)`	Debugging mse modules
`effort.is()`	effort implementation function
`fixedC.hcr()`	A fixed catch HCR
`fixedF.hcr()`	A fixed target f
`fwd.om()`	A method to project the operating model (OM)
`expandGrid()` `gridList()`	Functions to create grids and lists of model and simulation runs
`ices.hcr()`	The typical HCR used by ICES
`index.hat(<FLIndexBiomass>,<FLStock>)`	Predicted index of abundance from abundance estimates
`indicator.hcr()`	An indicator-based HCR
`indicator.is()`	indicator implementation function
`kobestatistics`	Kobe statistics
`mcN()`	Compute number of necessary Monte Carlo runs
`movingF.hcr()`	TODO:description
`mp()`	mp executes a single run of a Management Procedure
`initialize(<mpCtrl>)` `est()` `est<-`() `phcr()` `phcr<-`() `hcr()` `hcr<-`() `isys()` `isys<-`() `tm()` `tm<-`() `show(<mpCtrl>)` `iters(<mpCtrl>)` `method(<mpCtrl>)` `method<-`(<mpCtrl>,<`function`>) `args<-`(<mpCtrl>,<`function`>) `debug(<mpCtrl>,<character>)`	S4 class `mpCtrl`
`initialize(<mseCtrl>)` `method()` `method<-`() `args()` `args<-`() `show(<mseCtrl>)` `exists()`	S4 class `mseCtrl`
`p4om`	FLom object for North sea plaice
`perfect.oem()`	A perfect observation of catch and abundances-at-age.
`perfect.sa()`	A perfect 'estimate' of abundances, catches and harvest.
`performance(<FLQuants>)` `performance(<FLStock>)` `performance(<FLStocks>)` `performance(<list>)` `performance(<FLom>)`	Compute performance statistics
`statistics`	Example set of performance statistics
`tac.is()`	TAC implementation function
`tune()`	tune

Reference

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