A class for an operating model (OM)

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque eleifend odio ac rutrum luctus. Aenean placerat porttitor commodo. Pellentesque eget porta libero. Pellentesque molestie mi sed orci feugiat, non mollis enim tristique. Suspendisse eu sapien vitae arcu lobortis ultrices vitae ac velit. Curabitur id

FLom(...)

FLom(...)

# S4 method for FLom
stock(object)

# S4 method for FLom,FLStock
stock(object) <- value

# S4 method for FLom
sr(object)

# S4 method for FLom,FLSR
sr(object) <- value

# S4 method for FLom,FLom
combine(x, y, ...)

# S4 method for FLmse,FLo
om(object) <- value

# S4 method for FLmse,FLQuants
tracking(object) <- value

# S4 method for FLmse,mpCtrl
control(object) <- value

# S4 method for FLmse,FLoem
oem(object) <- value

Arguments

...: additional argument list that might never be used
object: object of relevant class (see signature of method)
value: Object to assign in slot

Slots

stock: The population and catch history, FLStock.
sr: The stock-recruitment relationship, FLSR.
refpts: The estimated reference points, FLPar.
fleetBehaviour: Dynamics of the fishing fleet to be used in projections, mseCtrl.

Validity

stock and sr dimensions: Dimensions 2:6 of the stock and sr slots must match.
rec age: Stock and stock recruitment residuals must use the recruitment age.

You can inspect the class validity function by using getValidity(getClassDef('FLom'))

Accessors

All slots in the class have accessor and replacement methods defined that allow retrieving and substituting individual slots.

The values passed for replacement need to be of the class of that slot. A numeric vector can also be used when replacing FLQuant slots, and the vector will be used to substitute the values in the slot, but not its other attributes.

Constructor

A construction method exists for this class that can take named arguments for any of its slots. All unspecified slots are then created to match the requirements of the class validity function.

Methods

Methods exist for various calculations based on values stored in the class:

METHOD: Neque porro quisquam est qui dolorem ipsum.

Author

The FLR Team

Examples

data(sol274)
#> Warning: namespace ‘DBI’ is not available and has been replaced
#> by .GlobalEnv when processing object ‘om’
comb <- combine(iter(om, 1:50), iter(om, 51:100))
all.equal(om, comb)
#> [1] "Attributes: < Component “refpts”: Attributes: < Component “dim”: Mean relative difference: 1 > >"
#> [2] "Attributes: < Component “refpts”: Numeric: lengths (10, 20) differ >"