All functions |
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Method AIC |
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Arithmetic operators for FLCore classes |
Method BIC Bayesian information criterion (BIC) method |
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Extract |
Class FLArray |
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Class FLBiol |
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Class FLBiols |
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Class FLCohort |
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Class FLCohorts |
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Class FLComp |
Class FLComps |
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Class FLI |
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Class FLIndex |
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Class FLIndexBiomass |
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Class FLIndices |
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Class FLModel |
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Class FLModelSim |
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Class FLModelSims |
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Class FLPar |
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Class FLParJK |
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Class FLPars |
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FLQuant class for numerical data |
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A class for samples of a probability distribution |
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A class for jackknifing fisheries data |
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Class FLQuantPoint |
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Class FLQuants |
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Class FLS |
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Class FLSR |
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Class FLStock |
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Class FLStockLen |
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Class FLStocks |
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Class FLlst |
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Calculate the discards and landings-associated fishing mortalities |
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Stock-Recruitment models |
Catch curve estimates of total mortality at age (Z) |
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accessor and replacement methods for FLCore classes |
Recalculate to adjust abundances to F and M |
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Append objects along the year dimension |
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apply method for FLCore classes |
Generates a time series of possible bias-corrected lognormal autocorrelated random values |
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Bias of estimates through jackknife |
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Method Bubbles plot |
catch.n calculation method |
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Convert Objects Between Classes |
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A method for comparing FLR objects |
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Methods to compute quantities |
cpue, a method to generate an observation of a CPUE index of abundance |
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Create accesor methods for a given class |
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FLCore datasets |
Methods for binding objects of array classes along a given dimension |
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Summaries by dimension |
Method dims |
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drop method for FLCore array-based classes |
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Evaluates a predictModel slot inside the object cointaining it |
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exp and log methods FLCore array-based classes |
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Names of slots of a given class |
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Group objects over some index by applying a function over a single dimension |
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Growth models |
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Compute the inter-annual variability of a time series |
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Returns FLR objects trimmed to their shared dimensions. |
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Methods iter |
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Method jackknife |
Joins objects along a dimensions where dimnames differ |
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Lattice methods |
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Calculate quantile(s) of length distribution |
Compute mean absolute scaled error (MASE) |
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Computes the mean natural mortality acros the fully selected ages |
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Extract simply-defined metrics from compex objects |
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Generate a matrix to compute Mohn's rho for a single metric |
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msy: A series of methods to extract or compute MSY-based reference points |
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Method names |
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FLQuant arithmetic operators that extend objects |
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Method plot |
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A class for model prediction |
Returns the computed yearly production |
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Method propagate |
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Returns a series of properties of the fisheries element represented by the class. |
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Method quant |
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Methods quantTotals |
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Reads a single file with one year of data in VPA format as output by ICES Intercatch |
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residuals |
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Random noise with different frequencies |
Set of verify rules for an FLR class |
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Computes Runs Test p-values |
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Method show |
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Compute the 3-sigma limits and the corresponding p-value |
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Aggregate or select along unwanted dimensions |
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Drop unnecesary 'iters' |
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splits x along the iter dimension into the groups defined by f. |
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Method splom |
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A function to make available list elements inside a function or method |
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Calculate or return the Spawning Stock Biomass |
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Calculate next yera's SSB from survivors and Fbar |
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Standard units of measurement for a complex class object |
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Method summary |
Calculate the survivors of a stock to the next year. |
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Method sweep for FLCore classes |
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Returns the first and last parts of an FLQuant. |
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Method trim |
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Method units |
uom Units of Measurement |
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Table for conversions and operations between units of measurement |
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Extract and modify the lower and upper FLModel attibutes. |
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Verify FLR objects |
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Method wireframe |
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Total mortality z |