Function reference • FLSAM

All functions
`AIC()`	Akaike's information criterion for FLSAM
`FLSAM()` `update()` `FLR2SAM()` `runSAM()` `SAM2FLR()`	FLR Wrapper for the State-space assessment model (FLSAM)
`FLSAM.control()`	FLSAM.control
`FLSAM.out()` `sam.out()`	Create FLSAM formatted output file
`FLSAMs-class` `FLSAMs`	Class `"FLSAMs"`
`catchabilities()` `power.law.exps()` `obs.var()` `ssb()` `tsb()` `n()` `rec()` `f()` `fbar()` `catch()`	Accessor functions for FLSAM
`cor.plot()`	FLSAM sam variable correlation plot
`NSH` `NSH.sam` `HERAS.sams`	North Sea Autumn Spawning Herring Stock Assessment
`drop.from.control()`	Drop an element from an FLSAM.control object
`looi()` `loo()` `loi()`	Run a sequence of assessments leaving one fleet (non-catch) in or out
`lr.test()`	Perform a log-ratio test for all models specified
`monteCarloStock()`	Generate new starting conditions of numbers and f-at-age.
`obscv.plot()`	Create diagnostic observation variance v.s. CV plot.
`obsvar.plot()`	Create diagnostic observation variance plot.
`otolith()`	Visualise uncertainity in the terminal Fbar and SSB
`params()` `coef()` `coefficients()`	Parameter accessor functions for FLSAM
`procerr.plot()`	Produce diagnostics on process error in the SAM Model
`residual.diagnostics()`	FLSAM assessment diagnostics
`retro()`	Retrospective stock assessment for FLSAM

Reference