All functions

FCB() `FCB<-`()

Create and extract the FCB slot in fwdControl

FCBDrawing()

A class for drawing the FCB matrix

add_target_order_fls()

Add the order column to the control target

basicBlock basicBlock-class

A base class for drawing FCB bits

biolBlock biolBlock-class

A class for drawing a biological stock

calc_F()

Calculate fishing mortality

catchBlock catchBlock-class

A class for drawing a catch

coerce

Methods for coercing objects between classes

compare(<FLStock>,<fwdControl>) compare(<fwdControl>,<FLStock>) compare(<FLBiol>,<fwdControl>)

Compare the result of a fwd() run with the defined targets.

draw()

Generic method for drawing components the FCB matrix

fcb2int()

fcb2int function

ffwd()

Project forward an FLStock for a fbar target

fillchar()

Fill up character slots

fisheryBlock fisheryBlock-class

A class for drawing a fishery

fwd(<FLBiols>,<FLFisheries>,<fwdControl>) fwd(<FLBiols>,<FLFishery>,<fwdControl>) fwd(<FLBiol>,<FLFisheries>,<fwdControl>) fwd(<FLBiol>,<FLFishery>,<fwdControl>) fwd(<FLBiol>,<FLFishery>,<missing>) fwd(<FLStock>,<missing>,<fwdControl>) fwd(<FLStock>,<ANY>,<missing>)

Method for running fishery projections

`[`(<fwdControl>,<ANY>,<ANY>,<ANY>) `[<-`(<fwdControl>,<ANY>,<ANY>,<vector>) `[<-`(<fwdControl>,<ANY>,<ANY>,<ANY>) `$`(<fwdControl>) `$<-`(<fwdControl>,<vector>) `$<-`(<fwdControl>,<AsIs>)

Set and replacement accessors for fwdControl

fwdControl() G()

A class for the targets and limits of a fishery and stock projection.

get_FLQuant_element()

Return 1D element index of an FLQuant

get_FLQuant_elements()

Return 1D vector of element indices of an FLQuant

guessfcb()

Generate an FCB matrix from FLBiols and FLFisheries

inlineCxxPlugin()

Make the plug in for inline Cxx

`iters<-`() iters(<fwdControl>)

Access and replace the iters slot of the fwdControl

make_test_operatingModel()

Make a test operating model from a single FLStock object

match_posns_names()

Change names of biols, catches and fisheries in the control object into integer positions

biols flfs

An FLBiols object used in mixed fishery vignette

operatingModelRun()

Call the CPP operatingModel run method

parsefwdList()

Parse the list argument to fwd to make a fwdControl object

partialF()

Calculation of fisheries partial fishing mortalities

plot(<FLStock>,<fwdControl>) plot(<FLQuant>,<fwdControl>) plot(<FLQuants>,<fwdControl>) plot(<FLStocks>,<fwdControl>)

plot methods that highlight years in fwdControl

propagate(<fwdControl>)

Propagate the fwdControl

random_FLBiolcpp_generator()

Generate randomly sized and filled FLBiolcpp objects

random_FLCatch_generator()

Generate randomly sized and filled FLCatch objects

random_FLCatches_generator()

Generates an FLCatches object - a list of randomly sized and filled FLCatch objects

random_FLFisheries_generator()

Generate a randomly filled and sized FLFisheries object

random_FLFishery_generator()

Generate a randomly filled and sized FLFishery object

random_FLQuant_generator()

Generate randomly sized and filled FLQuant objects

random_FLQuant_list_generator()

Generate lists of randomly sized and filled FLQuant objects

random_fwdBiols_list_generator()

Generates a list that can be passed to the CPP fwdBiols constructor

random_fwdControl_generator()

Random fwdControl object creator

show(<fwdControl>)

Show method for fwdControl

stf()

Prepare object for future projection

summary(<fwdControl>)

summary method for fwdControl

target() `target<-`()

Access and replace the target

targetOrder()

Get the order of targets in a fwdControl