Changelog

Source: NEWS.md

mse 2.2.2

NEW FEATURES

  • New hockeytsick.hcr, can be used to set multiple HS-shaped HCRs.

mse 2.2

NEW FEATURES

  • The FLom class now derives from a parent virtual class FLo.
  • A FLombf class contains slots @biols, of class FLBiols, and @fisheries, of class FLFisheries.
  • mp() now class a goFish method for each of the FLo-derived classes: FLom and FLombf.
  • oem modules need to take an FLo-based object as input.
  • tracking is handled by methods dealing with stock being of either FLStock or FLStocks class.
  • Added performance(FLombf) to be called by performance(FLmse).
  • merge(FLQuant, data.table) method to assemble output tables.
  • debugf() method for FLom and FLombf, applies to projection slot.

USER-VISIBLE CHANGES

  • Argument indicators in performance() has been renamed statistics, to clarify the role of that element. Indicator is now restricted to refer to empirical metrics obtained from operating model observations that are used to provide indications of changes in stock status. For example, catch rates by fleet.
  • dims(FLombf) returns unit and season data.

mse 2.1

NEW FEATURES

  • metrics method for FLmse, calls metrics(FLStock).
  • control(FLmse) and control(FLmse)<- can extract or modify individual list elements.
  • Accessors for and @deviances now accept a subsetting name, as in observations(FLoem, “stk”).
  • Inputs to tunebisect() are now checked for coherence and dimensions.
  • fwd(FLom) calls FLasher::fwd(stock(FLom), sr(FLom), …).

BUG FIXES

  • Bug in calculation for multiple years, recycling of refpts going first along years, not iters.

mse 2.0

USER-VISIBLE CHANGES

  • genArgs renamed args
  • ctrl.mp renamed ctrl
  • elements of ctrl.mp don’t use ctrl.## anymore
  • mp oem default became NULL

BUG FIXES

  • mlc.est fixed
  • it wrongly passed to goFish fixed
  • oem set of dataYears fixed
  • mp without oem now creates one which is conform the other objects.

mse 1.0

USER-VISIBLE CHANGES

  • metric.phcr, C.obs and C.est added to the tracking matrix
  • length.est renamed to mlc.est

BUG FIXES

  • movingF hcr and phcr fied to work with FLPars

mse 0.9

USER-VISIBLE CHANGES

  • Complete new code base.

BUG FIXES

UTILITIES

DOCUMENTATION

DEPRECATED & DEFUNCT

mse 0.0.4

USER-VISIBLE CHANGES

  • Methods moved to FLCore: rnoise, rlnoise