summary_flbeia.RdThese functions return the biomass (B), fishing mortality (F), spawning stock biomass (SSB), recruitment (R), catches (C), landings (L) and discards (D) indicators.
F_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) SSB_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) B_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) R_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) C_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) L_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) D_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) summary_flbeia(obj, years = dimnames(obj$biols[[1]]@n)$year) ecoSum_damara(fleets, flnms = "all", years, covars = NULL)
| obj | The output of the FLBEIA function. |
|---|---|
| years | The years for which the indicators are extracted. |
| fleets | A FLFleetsExt object. |
| flnms | Names of the fleet for which the indicators will be calculated. |
| covars | List of FLQuants with information on covariates. |
B_flbeia, F_flbeia... return an array with three dimensions (stock, year and iter). The summary_flbeia function returns an array with 4 dimensions (stock, year, iter, indicator) with the value of all the indicators.
B_flbeia this function computes SSB.
F_flbeia this function computes fishing mortiality.
SSB_flbeia this function computes spawning stock biomass by species.
R_flbeia this function computes recruitment by stock. If the stock is defined by age this function the recruiment is computed. ; If the stock is follows a biomass dynamics, this function gives the growth.
C_flbeia this function computes catches by fleets and stock.
L_flbeia this function computes landings by fleets and stock.
D_flbeia this function computes the discards by fleets and stock.
summary_flbeia this function computes recruitment, SSB, fishing mortality, total biomass for all stocks; and catch and landings for all fleets by year and stock.