FLR

FLCore

as(FLStock,"FLIndex") is inconsistent in what is found in the slots, e.g. index, effort and catch
I have created a new one that is consistent and corresponds to an unbiased index of stock.n can we use this

Validation of FLIndex is wrong as index.q and effort should not be by age, can we change this

"]<-" for FLComp has to be done on a case specific basis as it doesn´t work when some FLQuant slots have ages and some don´t
"]<-" doesn´t work when some slots have 1 iter and some n
There are also some problems with iters e.g. creating an FLQuant out of an array with iters doesn´t work, i.e. the inverse of is OK

x<-m(ple4)[,ac(1990:2000),drop=T]
FLQuant(x)

but not
x<-propagate(m(ple4),10)[,ac(1990:2000),drop=T]
FLQuant(x)

Querying the number of iters is also inconstistent, for example you can have iters from 0;1000, where the 0th iter corresponds to the deterministic run, But if you use dims on a composite object like FLStock you wouldn´t know this, as you cant´t query dimnames.
This can cause problems in 2ndry packages.

Also some things don´t work in 2ndry pacakges if the iters are all the same, I´ve tried to fix this but still somethings broken